NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2010_c10001361

Scaffold DelMOSum2010_c10001361


Overview

Basic Information
Taxon OID3300000101 Open in IMG/M
Scaffold IDDelMOSum2010_c10001361 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)19714
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (70.73%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Associated Families14

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F015659Metagenome253Y
F016292Metagenome248Y
F017045Metagenome / Metatranscriptome243Y
F021402Metagenome219N
F023243Metagenome211N
F030882Metagenome184N
F033599Metagenome / Metatranscriptome177Y
F050679Metagenome / Metatranscriptome145N
F072753Metagenome121N
F077486Metagenome / Metatranscriptome117N
F087894Metagenome / Metatranscriptome110N
F090862Metagenome108N
F092717Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
DelMOSum2010_1000136117F017045AGGAMAKSNSLLRRYAKLNKLHGEIMQKPKNNVGQCVHSLQAFKKYVKTFRQIVLVENGDAIFKHTQL*
DelMOSum2010_1000136119F072753AGGAMNKNNGHIYLSKIKYDCLDFISNFIKQNKFSPTYKEIGEHFQFSRARAGAICAELFKLGLISKGKAAHRKIRMTDKQTTQIPNLNFNKEYSTMDLRR*
DelMOSum2010_1000136121F092717N/AMADFNNKISLWKRKPSENDVAGKAYPHYQGNINVDGVVKDVAVWIQTDKKNPNQPDMSGTVKEPYKKPENKTEEIPY*
DelMOSum2010_1000136122F015659GAGGVKNDLAAAIKKFRDSIDDKDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTESTELTNGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKIISKPVPQVDTTKLANEWIAKLKDCAKLSASPNKFENNIQIQTKQFESELNQIKLDPIEDLRVETEYTKLKSQIQKQQGKNNGRL*
DelMOSum2010_1000136123F030882GAGGMDFKGLIDHYETLPKSELIEKLVFKNARLLTQDNVIEKLEDENKRITEVDKGHQKLVGELTQEIKQLNERGIK*
DelMOSum2010_1000136124F016292N/AMEKRIRKIGDCYTKFNLKHTSKSQNTIPDDIRFRNYVVMTPKEKMNMPKNCSFEGGTLAHEVVQIHLTENKTLEEALKSGVVQDRIENYYPLDEKDKIKFNFIVENLIGISQNHLDNIGELPKQKWKAEFEYTHWDDRIKTYFLSYVDLIGETHFGDIKNVFGRATPTKAGYSYSKPKVPLVPFHSDCLQIALYQKLLPKLKPFLTYASHSDRKIFTPENCVELRPESLEHYYDELVLYQKCWEKKLELADGNIETLALLCKPDLSEIRKNGFWWKGTDPDVVKRFRGYYGL*
DelMOSum2010_1000136127F023243GGAMNPEIELDLYEMTTAAQTGLLRVTESIKLKQKWWHGYKGTLEDKISKSISGAMAEISLCKYFGIPFEFHTNVGSQADVKYKNYKIQVRSQTPKRNNNNSLIIRPDGVKPNEIYVFILSEAPKFIIKGFINSSAVIGKDNYLTDFNLARPKVWAVPLKILSPILLLKDGAWN*
DelMOSum2010_1000136131F001839AGGAGMKTFEKFDSYLLNNKVLTANEKVVYLICKSFENAPQGCRVSHKYLMVRTGIKTRKTLVKCLDRLTLFGMLARKQINNGTCHYVFDKELMQQYIQHNQNKRRKIKLSKNKNNSQFNQQIDNVIHIVKKNK*
DelMOSum2010_1000136132F090862GGAMVNYVDPKLVAKALARVTKSSNIHYTSAVKKIKKNRKQYYQNKTTKTLQKSLSKDRFNTYLEELYKHDND*
DelMOSum2010_1000136133F021402AGGAGMITTNLTIDELDRFLQISSFCDSKMPNVKAKSLPTMFKVIDNTIGIGDDKDSIKYSDKHLARLKITLTSRQITIYDFIAILMLDAAEKDRELLYLRNFPQRKSLRQMKRMYLDWSHTKIGYEYNKALIAVCKIANKNLKKYFTS*
DelMOSum2010_1000136134F077486GAGGMIRNNKILTNPVSMFKIDIVKVFKKKETLKDIFKCKKLQKKHKLQDFKPI*
DelMOSum2010_1000136135F050679N/AMANKTKKNNKVLQEIYEELATGASIRSCLSPINKKEDRPCWQSFRTWMAKDQEIRKNYEQAKTDGIEYLLSDATDTINQALEDSKFKEKTDLGQTHLIKSFIDLTKWKSERLAPKSYLKKDTLQLLGSDSSPLVVKWDK*
DelMOSum2010_1000136136F033599AGGAMYEFGDKKLGYTAIVYVMESTNSVIVHFDGFNNLKECNKFSYQIMDDLGIEPLFKPQDITLH*
DelMOSum2010_100013617F087894N/AMDFILIMVICSTIEGNKCQQVPLPLDNFQDHYDCVSFGYDFSHKMISGMSREFVNKQGAYMKFVCEETVKVNT*
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