Basic Information | |
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Taxon OID | 3300000101 Open in IMG/M |
Scaffold ID | DelMOSum2010_c10022219 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3674 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002915 | Metagenome / Metatranscriptome | 521 | Y |
F004166 | Metagenome / Metatranscriptome | 450 | N |
F007087 | Metagenome / Metatranscriptome | 358 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
DelMOSum2010_100222191 | F004166 | N/A | MKTLLLLILVVPLISCSDHQTNDSWGSYATNKETQKQEFWFTSYKTRDECEADMYWQLEGEDDDSKQRISNWHTKPYGCHFMSNNKWLSMYYYLIDKDENLGCLWESSNPNVRIKYSVTLKSFVSVPEQGRCILGD* |
DelMOSum2010_100222192 | F002915 | AGG | MRILLLLLLTIPVIGQSEETFTNEQGLKIKYVKPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICGDRGMVEKLEKKAKEAE* |
DelMOSum2010_100222194 | F007087 | AGG | MKKLLLIALTIPNFVLAEDFKLVCEGEESTFRNDVLENTSKATRTLQVKDDLIVIDAMTYKSKTFDYGAIKGSSKYVKDDTQIVLETTQVSNECDTALMNVKLNRSSGMIEAASKRIGACDGSSFTTSSKFMGKCK* |
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