Basic Information | |
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Taxon OID | 3300000101 Open in IMG/M |
Scaffold ID | DelMOSum2010_c10084389 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1389 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005743 | Metagenome / Metatranscriptome | 391 | Y |
F018266 | Metagenome / Metatranscriptome | 236 | N |
F028035 | Metagenome / Metatranscriptome | 193 | N |
F046634 | Metagenome | 151 | Y |
F076505 | Metagenome | 118 | N |
Protein ID | Family | RBS | Sequence |
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DelMOSum2010_100843891 | F018266 | GAGG | MFRVILENKFRENPINLSRAVKLLYNQDFTGSIRLENILWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKLSIRVVTIPSSPDKRELLVLNKIYGGNNG* |
DelMOSum2010_100843892 | F005743 | N/A | LGTPPPSEGLPLIGDYMKRNLIVYKVDYVNRHEDYNTQTGKFVRTKRIVMTLDEVNQTDGYWRNHSRVEKKFDKQMNSNESHWNSKYRIIRTRKAK* |
DelMOSum2010_100843893 | F046634 | AGGAG | MTTQQTFIPYTESKSAEDRIAYVKANPGKYMPKAQYDIVKSLITKIDALDSKMNEILAKK |
DelMOSum2010_100843894 | F028035 | GAG | MITYNMEVQLEGDTDKCGNYITVQYEFPFPENSVLIERDKEMNRILTKPIIITTSNNNNCQQ* |
DelMOSum2010_100843895 | F076505 | AGGA | MTFHIWMGLLAILSSFVLSFLGVILMIHLDFWTGVLLTITGMVCLLKALPRISEEI* |
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