NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2010_c10090935

Scaffold DelMOSum2010_c10090935


Overview

Basic Information
Taxon OID3300000101 Open in IMG/M
Scaffold IDDelMOSum2010_c10090935 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1307
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019393Metagenome230Y
F024653Metagenome205Y
F059361Metagenome134Y
F074146Metagenome120N
F083382Metagenome113N

Sequences

Protein IDFamilyRBSSequence
DelMOSum2010_100909351F059361AGGAGGMLSDAITTVGFALQAHANTCYHEDTEENRAEREELEVAWSIIKSHLNMSDDVSDNNLQPQRGH*
DelMOSum2010_100909352F024653AGGAMSRDIDTIPTVRRHIVSYKIYAEWSDSPKLVEIEHEMGNFLENTFNDWLRDIEDEEDLKC
DelMOSum2010_100909353F074146AGGAGMRSRGFKLTEFRNKWKTIYSKTFLNKYIPIHEDVWVDDKEFIETMKKPEGEQYIWTVLEENGTWIVTSGYHLVNRIGFIITKNKWEHNMNIEVKGY*
DelMOSum2010_100909356F083382AGGAMLDKIKNRDILVSVDDASDIAKKEYESYIKHQEQVDDLDNQHYSEGEQYD*
DelMOSum2010_100909357F019393N/ADVDSFIEAHDGLWQMLGAKYKKLDKETVVIDNTTWKLKKGNMTCLTK*
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