Scaffold DelMOSum2011_c10191603

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold DelMOSum2011_c10191603

Scaffold DelMOSum2011_c10191603

Overview

Basic Information
Taxon OID	3300000115 Open in IMG/M
Scaffold ID	DelMOSum2011_c10191603 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	575
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.848917	Long. (^o)	-75.1076	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043827	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_101916031	F043827	GAGG	MDRITMKKKESLGFFDTQATYDDWKKIGSFSKLQVWVDDSMDEMLWIEVVDTSVVHGRSPQRVKRVLEIQLTKTQFKAYHVDMTRLDHKYAGRGIAAKAYRYIIKKLGLTLQAGCCQSKGGRKVWFDLAQRSDLNVFAKTKYGQPSTVGIDCEEREVWLPKRE

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