Basic Information | |
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Taxon OID | 3300000116 Open in IMG/M |
Scaffold ID | DelMOSpr2010_c10006077 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6597 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (70.37%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.848917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000919 | Metagenome / Metatranscriptome | 834 | Y |
F001971 | Metagenome / Metatranscriptome | 609 | Y |
F007265 | Metagenome / Metatranscriptome | 354 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
DelMOSpr2010_1000607712 | F000919 | GGAGG | MRFRDIEFRWSKCNNKHELVKWNTPTEDSFFKDPTCYVIAFFDKNKEGYDMRTIGDRFFEDKDAWVVGKYALGFLNAIFQIEQDEEELK* |
DelMOSpr2010_100060772 | F007265 | N/A | MISPYNIVPGTDIIHSITDVYELSDEAEGMTHTVKLQADNGGVYLESTEKQHDSEHRGITEYMSISNKDLAIVVAKRILELYGV* |
DelMOSpr2010_1000607721 | F001971 | AGGA | MTYEDFIHKGTEHYMDMVRLIDIKMKHRMDLTDREREINGYILEFQKQTKINELRDKFEKCLGIDNED* |
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