NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSpr2010_c10007141

Scaffold DelMOSpr2010_c10007141


Overview

Basic Information
Taxon OID3300000116 Open in IMG/M
Scaffold IDDelMOSpr2010_c10007141 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6032
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018178Metagenome / Metatranscriptome236Y
F082548Metagenome113Y
F088835Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
DelMOSpr2010_100071412F018178GGAGMDRMDAILTKLSERIHEWEAASVEAIEAETTFKSFEAAMQKAHMDSGSSAAKAQTETRSSPDWAGYYKVVQLANLKAEKIKKQIMLGQLMFDAERTKQANQRRIV*
DelMOSpr2010_100071415F082548GGAGMRSPRAIAQDMVKAMDAAAKKVWDSEPKKESDEKLKALVFAHVCNSYARRGGYAEK*
DelMOSpr2010_100071417F088835N/AMMKEIEPWEYIVANQLNFLSGRVVQLVTEYGVTKDIQVLEEACRDLATLVQRERFIEQRFENADSSD*
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