Scaffold DelMOSpr2010

Basic Information
Taxon OID	3300000116 Open in IMG/M
Scaffold ID	DelMOSpr2010_c10017215 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000116 Open in IMG/M

Scaffold ID

DelMOSpr2010_c10017215 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3586
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3586

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.848917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.848917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F012718	Metagenome	278	Y
F013946	Metagenome	267	Y
F034713	Metagenome	174	Y
F059991	Metagenome / Metatranscriptome	133	N
F074141	Metagenome	120	N

Family

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100172152	F012718	N/A	MSNLLQFDLSDIPDNPSIVLSGRRRAGKGVLCKDLCYNFFRGKVKNSFLFSPTAEIANNGFDFIPFEFRYSEVDVETIERIMKRQEYLIRNDPKGDFRTLIIIDDIIATNDNKQQKILDKLFICARHYQISLIVCYQYIKKDFTPVQRDNVDLIFCFQQSNFDNKDALNRQYLSVNDNKKDGMDLINKYAVGYQTLTIMNTTNSDKYEDFCYYYEADLINKKFKLGKDYE*
DelMOSpr2010_100172153	F013946	N/A	MDSQSIIDSMLRGVMIAGVNRAVFERKPVFSMGTINQGVRLGVASVGYDVVVRPAVKQVLPQLPLPNGR*
DelMOSpr2010_100172154	F074141	N/A	MTEECSDFKDVHYANKHKKLCAYCSYRLAIPSKNHQYCSEICRLLHLSITKKLNIEDIANLIKLSKVDLIHIILTLKCQDISLEGVHKILNKPYDYKQKILKKEDKKVLINFD*
DelMOSpr2010_100172156	F034713	N/A	MVLLTFSFTGENTTGAATFTIAQEYKFKNLYIEDIKYNIFNQQLENTISSGTTNAGIASVSTLITSPLGIHMDFLDTKDAVLYSLGDGSGETLNTAQNISGLIPIGYAGKVGSQPVSTRNTMSHSYPYKVISNRPQTWAXGKSLVFNLYYRDVLTDGIIKDWALMSGTTDAFSDINSISITLRLE*
DelMOSpr2010_100172157	F059991	N/A	DDLYLQTEFARGDTNADTGAKDCFLVDMAGAFTFSKIRVVYNGNTVFETTPEHLVVSLYGRANREQSLVLDGMLGSAIVGAANDTHTNLEGRMAMASSFGGQKLSCPLKCWFSESVGRNFDLYSLSSKCFLEVDYRPILDVHGKAETAADRITYAGSNLICYLNELSPQEISAYQSRNYAPNSVSSQLGYTTTQLVESVATPVLVTATTAGNKIKINSISGLCRRLYVFATLDADRASTTAKKYMNLVDLGSIKISANNQVIYEIQDCGVGIDNLNRTAGNGYQTDQFVEMFHNKLSGPANGAVASDTYKLTDIGVDKSIGKTSGDEFEFSRVKVINFGMNPDDYSSADGALALSQVNVPELEVKFPTGTSGAHSVHVVAELITLSTYNTSATGQINFKSISE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSpr2010_c10017215

Overview

Ecosystem & Geography

Associated Families

Sequences