NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSpr2010_c10025412

Scaffold DelMOSpr2010_c10025412


Overview

Basic Information
Taxon OID3300000116 Open in IMG/M
Scaffold IDDelMOSpr2010_c10025412 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2825
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002390Metagenome565Y
F008400Metagenome334Y
F101069Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
DelMOSpr2010_100254122F008400GGAMSKQDNSLLPKLAMGLALFIALKFVPKVLAWWQKRNKKQGET*
DelMOSpr2010_100254123F101069AGGMSKQDNNSKHTTKMKTINIKLTDEQHCMIKRIAKGDKRKVSDLIYLALSRGFEYMYDETSLHIDKVESDYTDEEKKQIAKNKKLEATKGWNDLNFKEQKERGYDYVCKVMSNYPSQKDFMPGFAESLERNVTEGLT*
DelMOSpr2010_100254125F002390AGGAGMKHASQLFPIALDSLLEIGEKARKQREDRERAKRVARPRETRACKHAMHEEKQAKQLQLQLK*
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