NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSpr2010_c10036459

Scaffold DelMOSpr2010_c10036459


Overview

Basic Information
Taxon OID3300000116 Open in IMG/M
Scaffold IDDelMOSpr2010_c10036459 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2252
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002333Metagenome569Y
F002738Metagenome / Metatranscriptome533Y
F013517Metagenome / Metatranscriptome270Y
F020161Metagenome / Metatranscriptome225Y
F038646Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
DelMOSpr2010_100364591F020161N/AMTQITQAKLKELNVIKLYEHYAALEKSLPLLTPESQELAKAELESCANLRSEKIDRIYYAMASHEDALERIKKEGDLITQAKRHHESQLRSLKSLLNYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYC
DelMOSpr2010_100364592F013517N/AMFESLFSAVLPVMKDLLWAAAGMLLTYVLNKVQSQFN*
DelMOSpr2010_100364593F002738N/AMTIDTYGLTFDQYEEFFDKNIRLAARLYLKTCNILNEEGAGHVDFKTILDIYQETVYAANDDCRRYQKSNNPEALKDGDLYNISPTREEIMEEIQSINAKVESLTDYIGNLVTVTTAGLEGIATTLDDKVD*
DelMOSpr2010_100364594F038646N/AMNDSDDILEYARQLAANPPMKTTEHYSYRLEISSDLHWELVKLGAELKMDYEVYAEEVLKMHAEDAISKRITAKAYSDPSWVYKLSLECVEEEDGTMSINIEWDEKDPDLQYWTNLGPKGQEDFILAALRSACDSVLSDHDN*
DelMOSpr2010_100364595F002333N/AVVRRDGSEQAYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWHYSHALGHLTHNAKLQAHWADKFIHVTEQQKVISLLQSDQTDLGHLVAPEGLRLPNRPIDLDSDMEDQESGVPPVHAEPYCSCGSFQRQLLNLSEFQSEIEGFKPWCIHLSWFGKYRELLCKRTEARNASPSGTPEKCVAWWYAPPKDSISDGRFVLLYTNSGAQSPLSHWRTYKAKEVFTQYHAWDLFFNMMEAGYVPFPGVSLPQLKSAIKKA*
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