NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOWin2010_c10003252

Scaffold DelMOWin2010_c10003252


Overview

Basic Information
Taxon OID3300000117 Open in IMG/M
Scaffold IDDelMOWin2010_c10003252 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)10161
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (85.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024796Metagenome / Metatranscriptome204Y
F030771Metagenome / Metatranscriptome184Y
F071290Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
DelMOWin2010_1000325212F024796GGAGMGQYSDLVEKQRTLLEVEKWRKGVKQIMMVASPDKKLWTTTYNDEAQLFEKFQDDRWTSTTLASRMSTQDCVDQMSREEQDVKSRR*
DelMOWin2010_100032524F030771AGGAGMQLLEVMNMDNLVLHSREDEQGSSGAMIRKELQRRKAIGYWKGEFAKYEVKEDEPVSTLGTVRIVS*
DelMOWin2010_100032526F071290AGGAGMPAKWKESEVVVPRDQRGRIMRTDNPVKTYTHYYLKQTPSAELIEYLNGYSSKPKKIMKARNELVRRGYTITWKPKAVI*
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