NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOWin2010_c10009688

Scaffold DelMOWin2010_c10009688


Overview

Basic Information
Taxon OID3300000117 Open in IMG/M
Scaffold IDDelMOWin2010_c10009688 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5518
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005704Metagenome / Metatranscriptome392Y
F016805Metagenome / Metatranscriptome244N
F077255Metagenome117N

Sequences

Protein IDFamilyRBSSequence
DelMOWin2010_1000968813F077255AGTAGGVIHLFNNRLILERRKLSENWRCRVRLGPKPEQQIEVDLKTPDXRTAFIRANNIYQSFRKGDRLQPLEDPEPTGKRCWDCIQWAPTLTHNGGNGCSLGFPEAKSYARGRFANLCSLYDDGTESFEPD*
DelMOWin2010_100096885F005704AGGMHNRLSLLGGALALLTTVVATTVTIDSRYAKSAEVKEQFCQARKQQLRDRIFELDLKNPKTPNDRALREYLQQQLRDGC*
DelMOWin2010_100096887F016805N/AVDPFLTPLVTAAIIAGVSALWRIDKRASVMDTRMALILEQITALRSDHKERLDDHEIRLRTLEQRLK*
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