NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOWin2010_c10013419

Scaffold DelMOWin2010_c10013419


Overview

Basic Information
Taxon OID3300000117 Open in IMG/M
Scaffold IDDelMOWin2010_c10013419 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4534
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010537Metagenome302N
F039587Metagenome163N
F106083Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
DelMOWin2010_1001341912F039587N/AMEKLLNQYHSLFLTKCEVKEIFRLKSDKALNAFKREFGIRKRGQYYLASDVKKVIAIFSEEVA*
DelMOWin2010_100134193F010537AGGAMKTHYKMGRGLPRGEKVVVKVGSRQADVILDTDKMNWRVKLDTPDLPELEYPTLQNAVMSAETILKEAR*
DelMOWin2010_100134197F106083GAGMENKYWLLEPQDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEECEDGEEVSKV
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