NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOWin2010_c10022624

Scaffold DelMOWin2010_c10022624


Overview

Basic Information
Taxon OID3300000117 Open in IMG/M
Scaffold IDDelMOWin2010_c10022624 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3231
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011489Metagenome290N
F013089Metagenome274N

Sequences

Protein IDFamilyRBSSequence
DelMOWin2010_100226242F011489AGAAGMNSGSRKGWNSFLTKHYSKLVRIARRWTDSPSDLVHHTYLRCIDKRFPDGDNDNPLGYFVKAMYTEATRGKFKDLYHVTDADPKEQTFENDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSGVGESTLYRSLHITRKILKDVLRNGTKED*
DelMOWin2010_100226247F013089N/AAERGRNKSLKPKKMGQSKIKTIQPNGTYDSQNGLMYKFEVELESGECGEVSAKTENRWNVGDEVEYDITESKWGNKIKLTKPGFNTNQSKANNPDIQKRIDASWAIGHAINQESDPEKILEAAEFLLSIRNTLISKL*
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