NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KGI_S1_ANT01_95mDRAFT_c10002083

Scaffold KGI_S1_ANT01_95mDRAFT_c10002083


Overview

Basic Information
Taxon OID3300000119 Open in IMG/M
Scaffold IDKGI_S1_ANT01_95mDRAFT_c10002083 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in Antarctica -King George Island site S1 sample ANT 01_9.5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)9958
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameS1 site, Potter Cove, King George Island, Antarctic Peninsula
CoordinatesLat. (o)-62.230512Long. (o)-58.656117Alt. (m)Depth (m)9.5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001728Metagenome / Metatranscriptome645Y
F007114Metagenome / Metatranscriptome357Y
F013571Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
KGI_S1_ANT01_95mDRAFT_100020832F013571N/AMEINLILLVPDAMIVGWQYHKPEKGFDFSELNLYLFFGQLQIRWAKDE*
KGI_S1_ANT01_95mDRAFT_100020834F001728N/AMNSIQLKKTDKEDHYRLILNGVDVTGEQERSVFRHILEIVDKGIDV*
KGI_S1_ANT01_95mDRAFT_100020838F007114N/AMTVKTDTMISTEAWDKLKKQIEYHLKQDNNLTDIRINYQVKIPERGTRNYLGLSVTIND*
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