NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TDF_OR_ARG04_113mDRAFT_c1039625

Scaffold TDF_OR_ARG04_113mDRAFT_c1039625


Overview

Basic Information
Taxon OID3300000121 Open in IMG/M
Scaffold IDTDF_OR_ARG04_113mDRAFT_c1039625 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 03_11.3m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)557
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. ELB17(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameMC site, Ushuaia Bay, Tierra del Fuego, Argentina
CoordinatesLat. (o)-54.810872Long. (o)-68.295525Alt. (m)Depth (m)11.3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005815Metagenome / Metatranscriptome389Y

Sequences

Protein IDFamilyRBSSequence
TDF_OR_ARG04_113mDRAFT_10396252F005815AGGAMTMKVTRLTTYWTIDEAATAIDFLDILRDALWETYGEQITAMHREAYDNRFQDINQCELGFDDDIPF*
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