Scaffold BS_KBA_SWE12_21mDRAFT_c10164407

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BS_KBA_SWE12_21mDRAFT_c10164407

Scaffold BS_KBA_SWE12_21mDRAFT_c10164407

Overview

Basic Information
Taxon OID	3300000124 Open in IMG/M
Scaffold ID	BS_KBA_SWE12_21mDRAFT_c10164407 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	531
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	KBA site, Vaertahamnen, Baltic Sea, Sweden
Coordinates	Lat. (^o)	59.363333	Long. (^o)	18.119167	Alt. (m)		Depth (m)	21
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F098938	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
BS_KBA_SWE12_21mDRAFT_101644071	F098938	GAG	MHGNSAAGFLDSFVQDEIKCRCLDEEDFGQPIDNEENDVPLYDMYNRGLAACEQGMERTNLGLEGNPALAGQRP

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