NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TDF_MC_ARG01_113mDRAFT_c1000358

Scaffold TDF_MC_ARG01_113mDRAFT_c1000358


Overview

Basic Information
Taxon OID3300000125 Open in IMG/M
Scaffold IDTDF_MC_ARG01_113mDRAFT_c1000358 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 01_11.3m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4639
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameMC site, Ushuaia Bay, Tierra del Fuego, Argentina
CoordinatesLat. (o)-54.810872Long. (o)-68.295525Alt. (m)Depth (m)11.3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031655Metagenome / Metatranscriptome182Y
F046627Metagenome151N

Sequences

Protein IDFamilyRBSSequence
TDF_MC_ARG01_113mDRAFT_10003582F046627N/AMSFLKGDIGEELWVNHLKEMGHEDLETAPKRKFYDWDIKSSINGKTYTFEVKYDSKAYWWAKRRKTPDKPNLYIEFKNTNKNEDSGIKASKATYYIYMLKDEERVDAYVFEREGLLSHLLSVTYKTAGNSATGDNNALGWIPPLDSLVTQKFFLQKVSLKV*
TDF_MC_ARG01_113mDRAFT_10003586F031655N/AMNFAIDIAPLAGILIGMNYWNSEMNDDYENPKYHSLQLCLGIFALVITWESE*
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