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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000125 Open in IMG/M |
| Scaffold ID | TDF_MC_ARG01_113mDRAFT_c1003960 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 01_11.3m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1268 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | MC site, Ushuaia Bay, Tierra del Fuego, Argentina | |||||||
| Coordinates | Lat. (o) | -54.810872 | Long. (o) | -68.295525 | Alt. (m) | Depth (m) | 11.3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000751 | Metagenome / Metatranscriptome | 907 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| TDF_MC_ARG01_113mDRAFT_10039602 | F000751 | GAG | MKIYKAVFDTEEQGKEYLLNIGVLIEQDSDEGVEIVFAPTTAAVVYVGKVVEIPGTYGPDGHEITPPVYYPGFAIDVMSSSDXDFGTYAVYPADASAHSFYGWAKNAEVPPPAAPEDKAKAIIEE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |