NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BS_KBB_SWE26_205mDRAFT_c1001114

Scaffold BS_KBB_SWE26_205mDRAFT_c1001114


Overview

Basic Information
Taxon OID3300000126 Open in IMG/M
Scaffold IDBS_KBB_SWE26_205mDRAFT_c1001114 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 26_20.5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5511
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameKBB site, Vaertahamnen, Baltic Sea, Sweden
CoordinatesLat. (o)59.350163Long. (o)18.107847Alt. (m)Depth (m)20.5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082695Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
BS_KBB_SWE26_205mDRAFT_10011145F082695N/ALFVLLSYESQTGDESDVARWAHKLMNRSVANRTITKPEAMCELGQLPMVICSESIETVSITGQTRCSIDTTTSTILSQYKNRPNTQERLSLHEFYHAKRNNHSMATAANHREFVPHYVGGRGQPVYPVTDTKQSISYARSEILKHMPWSQKNPMPNECDWVAIFKEFLQDPSCPAGVKLGFERAKLRYELRRKGIQEVFQPDTEHSNATDDLDDDEIGDVIALTESLGYTEDELDKMEENGFCIGRDYDWGRRVYTVSNNCII*
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