NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SA_S1_NOR08_45mDRAFT_c10000997

Scaffold SA_S1_NOR08_45mDRAFT_c10000997


Overview

Basic Information
Taxon OID3300000128 Open in IMG/M
Scaffold IDSA_S1_NOR08_45mDRAFT_c10000997 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in Adventfjord, Norway : sample - Svalbard Archipelago station 1 sample NOR 08_45m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)12822
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameNorway: Adventfjord, Svalbard Archipelago
CoordinatesLat. (o)78.237209Long. (o)15.677776Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007692Metagenome / Metatranscriptome346Y
F009608Metagenome / Metatranscriptome315Y

Sequences

Protein IDFamilyRBSSequence
SA_S1_NOR08_45mDRAFT_1000099723F007692N/AMKELTTLSPTAFQARKAEAVRNEVMRKEISLSEFNVIDNTHIEVDGVKIELTPFAFKRLLGRLRIPTAFAKRFESGFGSDGLKQLVQMMKTMKSSKNDQTVTLLVDPRAKKVTNILPAGYASISNEAFIDFAEGYINQYGLEVKDFGSDPSGGATINCVSPNSVFSVPGMSDEVFNTGVTFRNTPTRGLEVSPYLNRLVCSNGMSSTAFSETYGLHELTDKSISEFNEHMISMASTGFQPVGLADKIKSANDTDASIAEVQRAMSAMLSTDKKIDFEYMQRYLPINRVMKAYSDIGAEPSTFTTKQLQNAKSGLSIWEVVNGITNFASNDEKYNIDDHKTGSLMVSAGNLLMKKNFDTXALIQFDPFATTGLLSEKESARLMGQA*
SA_S1_NOR08_45mDRAFT_100009974F009608N/AMKYIKPLNEARRIFQDTPNELAYLDFKKWAYKNRGKIKKGLAGITDSTKLFIALRQVWMDWANENAKEWSYLHSTDVARKDFGRALAVMLKTDDLIIKRSGNKLINLK*
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Institute for Fundamental Biomedical Research
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