Scaffold SA_S2_NOR15_50mDRAFT_c10061542

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SA_S2_NOR15_50mDRAFT_c10061542

Scaffold SA_S2_NOR15_50mDRAFT_c10061542

Overview

Basic Information
Taxon OID	3300000130 Open in IMG/M
Scaffold ID	SA_S2_NOR15_50mDRAFT_c10061542 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 2 sample NOR 15_50m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1496
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	Norway: Adventfjord, Svalbard Archipelago
Coordinates	Lat. (^o)	78.243786	Long. (^o)	15.656147	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F092105	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
SA_S2_NOR15_50mDRAFT_100615421	F092105	GAG	MLIDKQFELEIPTHIAFTLYKNDYVDNLIISKVKKECINESNNNTEFIVSLDQFQSAIKTSSFLRAEMKKVIDQDLLPNPNFKPNSIFFLQAIINRLTNLETITFKISNEKIFSRLVKV

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