NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SA_S2_NOR15_50mDRAFT_c10222998

Scaffold SA_S2_NOR15_50mDRAFT_c10222998


Overview

Basic Information
Taxon OID3300000130 Open in IMG/M
Scaffold IDSA_S2_NOR15_50mDRAFT_c10222998 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 2 sample NOR 15_50m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)588
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameNorway: Adventfjord, Svalbard Archipelago
CoordinatesLat. (o)78.243786Long. (o)15.656147Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051143Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
SA_S2_NOR15_50mDRAFT_102229981F051143GAGGMIRKVTREEELDRVDTMSTLEAVAYANQLSNRLKCDDCTDEERKNGLLLLGQLTTRVPFLKITLGLPTFCQIGWGHFAESGEAIK*

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