Scaffold SA_S2_NOR15_50mDRAFT_c10282742

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SA_S2_NOR15_50mDRAFT_c10282742

Scaffold SA_S2_NOR15_50mDRAFT_c10282742

Overview

Basic Information
Taxon OID	3300000130 Open in IMG/M
Scaffold ID	SA_S2_NOR15_50mDRAFT_c10282742 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 2 sample NOR 15_50m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	502
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	Norway: Adventfjord, Svalbard Archipelago
Coordinates	Lat. (^o)	78.243786	Long. (^o)	15.656147	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018541	Metagenome / Metatranscriptome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
SA_S2_NOR15_50mDRAFT_102827421	F018541	N/A	MNSPTMRSFWVDFPLNAEQYSRLKLKWRRRQNFYEIQNPHPDLRIRTFCTFGGDDYQVISLEARGNVDEYASALKVMDKWIVETLGKY*

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