NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPaug09P16500mDRAFT_c1007815

Scaffold LPaug09P16500mDRAFT_c1007815


Overview

Basic Information
Taxon OID3300000142 Open in IMG/M
Scaffold IDLPaug09P16500mDRAFT_c1007815 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2197
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP16, Pacific Ocean
CoordinatesLat. (o)49.283333Long. (o)-134.666667Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F039176Metagenome164Y
F084346Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
LPaug09P16500mDRAFT_10078152F084346AGAAGGMTFHTIIPRYQVETSNEQFQSPTKKQAEDIYQKYVNQKIPCELFLNGELQKEFKPL*
LPaug09P16500mDRAFT_10078154F000615GAGVTRNQNNIVSGLERPVNIMCRIRSFYECSDGTMGFAEMVVSYDEDIAGLIRHWGTGGRMVITEHVEMTV*
LPaug09P16500mDRAFT_10078156F039176GAGMETMITGNAIDLSLNRSLEELVSSYFEADAAGIELDEDTRPEELDDYYVLENY
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