Scaffold LPaug09P16500mDRAFT_c1049765

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LPaug09P16500mDRAFT_c1049765

Scaffold LPaug09P16500mDRAFT_c1049765

Overview

Basic Information
Taxon OID	3300000142 Open in IMG/M
Scaffold ID	LPaug09P16500mDRAFT_c1049765 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	606
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P16, Pacific Ocean
Coordinates	Lat. (^o)	49.283333	Long. (^o)	-134.666667	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043453	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P16500mDRAFT_10497653	F043453	AGGAGG	MSEQIKLVVDRKNKHGTDFYYPVCELSQTLVKLKGNTKKVLTKSDMFLLS

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