NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SI48aug10_120mDRAFT_c1007609

Scaffold SI48aug10_120mDRAFT_c1007609


Overview

Basic Information
Taxon OID3300000150 Open in IMG/M
Scaffold IDSI48aug10_120mDRAFT_c1007609 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2230
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 48, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049035Metagenome147Y
F089043Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
SI48aug10_120mDRAFT_10076091F049035AGGAMANWNSKELQTPPIIEQIQKNAQNAITNLDTLLQIVQGGADVAVKVLMLSNPAGAIIKLAANEIIKLCNDFKEIGVFYLFINPNDEGYGGQTSREFGLAIKQDNNGLYQFKPSKRPGFGLDFVNVEYQKTLNIADLTSAYKDSKSRNKNDPKFEPPTPIFDNPPIWELGGYDPATWTGHAPVTSIPLANGVFPPEMKPSKVLQIMSESFDDEGDVSTFEVIISQRDAALANPVYTASGATID
SI48aug10_120mDRAFT_10076094F089043N/ATTEDNLGNSFGTDFIVHEDGFGGKIETEDLVRSISFPNSGLNELDSYFPKFKHARDYALNRIKTDGTITQSEDVVTIQGVDATNIILLEDETGGILTEGGYFTVVLETGSQTFPTKYANALPTPARFISLKYQNGFSTNVSYASSNNEFIVQSNAEIDFTEGTADGESYELTYTDTSWPTTNGSSYWFMNNVENAPVVDDQSNILIFKTTTESTNFKVHFTIRAQKVHEHMAVYTGAAGTSTAASVLNTIDGWGDAFETGTGNYKDGYFYVSIYNNTDSDRDDQVMVFSDQNNASSTTLNFNDNAFKHRDDPDDPDTEISILNGEALTNSYSNGSFTLLTSI*
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