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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000152 Open in IMG/M |
| Scaffold ID | LPjun08P12500mDRAFT_c1002915 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 500m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3477 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | P12, Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 48.97 | Long. (o) | -130.666667 | Alt. (m) | Depth (m) | 500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001066 | Metagenome / Metatranscriptome | 788 | Y |
| F054103 | Metagenome / Metatranscriptome | 140 | Y |
| F064802 | Metagenome / Metatranscriptome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| LPjun08P12500mDRAFT_10029153 | F001066 | N/A | VAEDIFKIEPVGNKNLVKENKHKTISPFNSAKHLKTANLPALCNQCVYRSIEDGGNGKCPKYEADAVCSIRNDFINMINILDTRNPEDLKSMMDMLAKLSFENVLMALTQAKMDGNIPDRNTKSEVNTLLSIVKSINDLNSKIVVTEKTEYRQGDIENIFRQIKAQRTG* |
| LPjun08P12500mDRAFT_10029154 | F054103 | N/A | MKIYFNANNKATLEALERCGVRNVLLSHRYSYANINKFKSRFDSIFIVPGTKGNPDKYHEFLKKKREYYDYATQFDVFYNMDETLKYLKKEREDGIDWTLPILQENYLQHISRLRPKTGDYICIGEVHGKLETEDQIRKLPQNVEYHGLAKGKYIEKRPFKSLDTSGWISAAMSKKTEVWSGNSTFSLFFGEKGRGMKAQVASTLERFSDYLETVGISSKSVLENDYYSLLKLPIAVLYMPMCKSLGIYDINFK* |
| LPjun08P12500mDRAFT_10029155 | F064802 | GGA | MQQRVLQMSVRNLKTEESIRDLILFQKEKLLHENVDQTGMLPQTLIPPLLVDIPDEERRGIIRALRWVLSDEDIFQRE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |