NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPjun08P12500mDRAFT_c1019010

Scaffold LPjun08P12500mDRAFT_c1019010


Overview

Basic Information
Taxon OID3300000152 Open in IMG/M
Scaffold IDLPjun08P12500mDRAFT_c1019010 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1120
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP12, Pacific Ocean
CoordinatesLat. (o)48.97Long. (o)-130.666667Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017398Metagenome241Y
F034993Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
LPjun08P12500mDRAFT_10190101F034993AGGAMKSFKGYLNEFVIQSTSDYVFDTMSNSISDIKIPISGPMFKRIWPDTIRATVFHSTDTEHLAGLKKLEGKKKSISAFFSMMSTQMEGGIATDGGVVVEMEADVLISAKDDIMSAVDKGGRRWVEMSWFENAQGRGNPVGFDKVEQGFNTLIKNLVKKHLPKDHFKYPSILPHLEVWSDMKRQLKAGTPAGAKKISLVIKDYFDGVEKVIKKNKKVFETIFYG
LPjun08P12500mDRAFT_10190102F017398N/ATVPEIGIGVWYKLQTDFKDDGKKISLIIADYIDGVNAILKKHKKDIQGVVHGYYVRRGAVAVKHPSGRMVGGDSAIKEWNVYDEQVVDKIKIIKVHTFNTKTRETDWLAKSVIPRLGKIPHRHWVGGATELSTYVSQVAEAEVRSIGRSKR*
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