NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SI36aug09_200mDRAFT_c1011774

Scaffold SI36aug09_200mDRAFT_c1011774


Overview

Basic Information
Taxon OID3300000155 Open in IMG/M
Scaffold IDSI36aug09_200mDRAFT_c1011774 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)834
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 36, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.5663346Long. (o)-123.5193257Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063751Metagenome129N

Sequences

Protein IDFamilyRBSSequence
SI36aug09_200mDRAFT_10117741F063751N/ARYLSGPEEYASIMANELRDDTPPLAPKQRMYGIHGFHRKQEYTIPPETSNFHSTSETLIKPTTPPEGTKSGGIDPTPEPGSKEMGSASGYRQVQKGGQSIFAKNEKLWGKWVDHRIGGRVDSREWKGNKLVDLLPKGKK*
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