NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NODE_c0282052

Scaffold NODE_c0282052


Overview

Basic Information
Taxon OID3300000156 Open in IMG/M
Scaffold IDNODE_c0282052 Open in IMG/M
Source Dataset NameSugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAmbry Genetics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)555
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor → Sugar Cane Bagasse Incubating Bioreactor Microbial Communities From Sao Carlos, Brazil, That Are Aerobic And Semianaerobic

Source Dataset Sampling Location
Location NameSao Carlos, Brazil
CoordinatesLat. (o)-22.080556Long. (o)-48.997778Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054387Metagenome140N

Sequences

Protein IDFamilyRBSSequence
NODE_02820521F054387GGAGMDDPISPARRTLLKAGAATLATPVAAAIAQPAAAVGHQEAKSFDLWVISDQHVGTDKAASEGIQHGLVGFRPPPVRAESLA

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