Scaffold NODE_c0655583

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NODE_c0655583

Scaffold NODE_c0655583

Overview

Basic Information
Taxon OID	3300000156 Open in IMG/M
Scaffold ID	NODE_c0655583 Open in IMG/M
Source Dataset Name	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Ambry Genetics
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2370
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor → Sugar Cane Bagasse Incubating Bioreactor Microbial Communities From Sao Carlos, Brazil, That Are Aerobic And Semianaerobic

Source Dataset Sampling Location
Location Name	Sao Carlos, Brazil
Coordinates	Lat. (^o)	-22.080556	Long. (^o)	-48.997778	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004830	Metagenome / Metatranscriptome	422	Y

Sequences

Protein ID	Family	RBS	Sequence
NODE_06555833	F004830	GGAG	MGNHAVTLKVAPFVRLECKFWLTDDGWNGSCEQPRIAVQAGSFEHAKSEMESALGKYIEDLLRDLPRTTTGHAA*

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