Scaffold NODE_c0665587

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NODE_c0665587

Scaffold NODE_c0665587

Overview

Basic Information
Taxon OID	3300000156 Open in IMG/M
Scaffold ID	NODE_c0665587 Open in IMG/M
Source Dataset Name	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Ambry Genetics
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2598
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor → Sugar Cane Bagasse Incubating Bioreactor Microbial Communities From Sao Carlos, Brazil, That Are Aerobic And Semianaerobic

Source Dataset Sampling Location
Location Name	Sao Carlos, Brazil
Coordinates	Lat. (^o)	-22.080556	Long. (^o)	-48.997778	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001064	Metagenome / Metatranscriptome	789	Y
F004085	Metagenome / Metatranscriptome	454	Y

Sequences

Protein ID	Family	RBS	Sequence
NODE_06655872	F004085	AGGAGG	MGKILFSLTFATALLAFASSEASAFVYSSFVCQAVGVRSVGWGRSFFVGDAKMIALSRCARRSGICTISYCVPGY*
NODE_06655876	F001064	GGGGG	MALSLRDVWCDPIANRALNELMHHYTVAQEKSRLVLTKKTGDMKLFLNDLDDLHQWDFMRNQQMVKEIERLRGLLATTNQHRESWKVRALMAEAQLXXXXLHQWDFVRNQQMVKEIERLHVLLTTTNQQRESWKVRALMAEAQLLEATAKTGNKGGGAENVSDVRYASLKRYLAKRFHPDYAPGLGIEKIVRSEIFKEIWNEIDRLDQ

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