Scaffold SI54feb11_100mDRAFT_c1021131

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SI54feb11_100mDRAFT_c1021131

Scaffold SI54feb11_100mDRAFT_c1021131

Overview

Basic Information
Taxon OID	3300000158 Open in IMG/M
Scaffold ID	SI54feb11_100mDRAFT_c1021131 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 100m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1114
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet 54, Vancouver Island, BC, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046643	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
SI54feb11_100mDRAFT_10211313	F046643	N/A	MSNLIWSYGDTKLDRQGRTIYFIEYANQTDSKGNQIELWEPEDIFLARSPNYLKSVKYFLSILYYCCVYLVVAYIVLSVSVHFFDSISDDGLIETFKQILEELRATAFEVCWVI*

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