NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TB03JUN2009H_c001723

Scaffold TB03JUN2009H_c001723


Overview

Basic Information
Taxon OID3300000162 Open in IMG/M
Scaffold IDTB03JUN2009H_c001723 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4575
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066380Metagenome126N
F078384Metagenome116Y
F094772Metagenome105N

Sequences

Protein IDFamilyRBSSequence
TB03JUN2009H_0017233F066380AGGGGGVKTILEEAVDAFRNMHEAFCLEMDMKKCKLNHHDLIKRLEEYEKSIEARIRSEVAGDLEEARDFLVLTKEPEEGTAAMWIKFAFDKAVGFLREEK*
TB03JUN2009H_0017237F078384GGAGMTYDFYAREWYGKCGACRTELYAPTKGAYLVQYSIHTHSDNCLGGY*
TB03JUN2009H_0017238F094772GGAGGVITPQQVEKRLFDLSKEMDEAHGDLVQAEQEFHAASANYEIAMAKARMKNSQSDLKMTATMREDQALIENEAMHLRLAIAEASVKASRANVNRIRTQVDITRSISSSIKATLEL*
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