Scaffold SI39nov09_120mDRAFT_c1005950

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SI39nov09_120mDRAFT_c1005950

Scaffold SI39nov09_120mDRAFT_c1005950

Overview

Basic Information
Taxon OID	3300000167 Open in IMG/M
Scaffold ID	SI39nov09_120mDRAFT_c1005950 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 120m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	4166
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet 39, Vancouver Island, BC, Canada
Coordinates	Lat. (^o)	48.35	Long. (^o)	-123.29	Alt. (m)		Depth (m)	120
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064391	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
SI39nov09_120mDRAFT_10059505	F064391	N/A	NKGNTSKVKTKKHIYPRKNRWGIVWSDTPASGSRRNLINDKLGKKIIDEFKLGFSSVQLEEKYRIDNDTILRFVKKILKKDEFESIEKQRINQHM*

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