NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold SI39nov09_120mDRAFT_c1075466

Scaffold SI39nov09_120mDRAFT_c1075466


Overview

Basic Information
Taxon OID3300000167 Open in IMG/M
Scaffold IDSI39nov09_120mDRAFT_c1075466 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)609
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 39, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.35Long. (o)-123.29Alt. (m)Depth (m)120
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013644Metagenome / Metatranscriptome269Y
F030157Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
SI39nov09_120mDRAFT_10754661F013644AGGAGGMPTTSNNSGIMAKRQSFNGRALTFVEVIFDVDITASATTPESKDSTFDTVSKVVNKNGNLLAQSYRLGGKATDNDAAEAAAINANDSIDSFQYIVEGTPGQYN
SI39nov09_120mDRAFT_10754662F030157N/AANTGGLELSMQAIQNQGVNILGKGVLSNSDTEQTYMVRRDSLDTISSTTTVAAIQAAVRALNAMTPDKVTATISSATAADRDMGDTSVGA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.