NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TB03JUN2009E_c000070

Scaffold TB03JUN2009E_c000070


Overview

Basic Information
Taxon OID3300000176 Open in IMG/M
Scaffold IDTB03JUN2009E_c000070 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31194
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (88.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013058Metagenome / Metatranscriptome274Y
F048059Metagenome148N
F062382Metagenome130N

Sequences

Protein IDFamilyRBSSequence
TB03JUN2009E_00007019F048059GGAGGMLLLDKKTLKKELKLFLDDKDRGISIKNFCEIAGISDRLFMYIIKENKLPMTEFVQRGLNRAYMHWKEGRLRVMKKHTNETYPDYRKEPVPAVMPMSKLVMTNTGFKVQNKPLNRHDYANFDNILLKT*
TB03JUN2009E_00007022F062382GGAGMTELLWMTEDELRERCYMLVEALLTSESHRVELINNMGKVLAYGYNRGYTDAAVQLKIETKSRDEEGHTVH*
TB03JUN2009E_0000703F013058N/AMNTLITTLKLKQVQWALVIAILSVLQGFVMELSLTPIHQMIAGVVIAVVVVLLKFTEQ*
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