NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TB03JUN2009E_c003901

Scaffold TB03JUN2009E_c003901


Overview

Basic Information
Taxon OID3300000176 Open in IMG/M
Scaffold IDTB03JUN2009E_c003901 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3226
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F024559Metagenome / Metatranscriptome205Y
F025277Metagenome / Metatranscriptome202Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
TB03JUN2009E_00390110F009462AGGAGMELHESVKDTYTEQVIKEHKGFRLTLRRHKVLNPKGLFSIDMFQESLKDGEVTDSQVYNFFMTRDEMATLASALTA*
TB03JUN2009E_00390111F025277N/APTIEVKGNMVINGVDLEERLKTIEKVLSIPERDVTLEHKHPKLKKLYDDYINALGKYRTFEAIKGDEDGTT*
TB03JUN2009E_0039015F070810AGGAVETSSVVWEIKLLWDNQDKYWWNEVCADVVEVFGLPGGRFTSHPYEDCMLFRFKSKKDYQLCKILLSDKV*
TB03JUN2009E_0039018F024559GGAGGMTSALVKLILGITLIVFVIIVGPLAGIWSLNTLFPVLHIAYTWETWLAFGILFGSATGLSFGSRKK*
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