NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FW301_c1040441

Scaffold FW301_c1040441


Overview

Basic Information
Taxon OID3300000178 Open in IMG/M
Scaffold IDFW301_c1040441 Open in IMG/M
Source Dataset NamePristine groundwater from Oak Ridge Integrated Field Research Center, Tennessee (resequenced)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)598
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Oak Ridge Integrated Field Research Center, Tennessee, That Are Pristine And Uranium Contaminated

Source Dataset Sampling Location
Location NameOak Ridge, Tennessee, USA
CoordinatesLat. (o)36.11569Long. (o)-84.248657Alt. (m)Depth (m)21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005385Metagenome / Metatranscriptome402Y

Sequences

Protein IDFamilyRBSSequence
FW301_10404412F005385N/AKKRSKRAQSSKFRIRVRYKYHYYKWIQTPDYGSFKDIYEKYKDKGYSFWCADLPPEFSSQDGTWTGYRLDGDKTHTASTLKRYGRHKAWIDPVYKFEGKPVILVYNAT*
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