Scaffold LPaug08P20500mDRAFT_c1009322

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LPaug08P20500mDRAFT_c1009322

Scaffold LPaug08P20500mDRAFT_c1009322

Overview

Basic Information
Taxon OID	3300000183 Open in IMG/M
Scaffold ID	LPaug08P20500mDRAFT_c1009322 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P20 500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	794
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P20, Pacific Ocean
Coordinates	Lat. (^o)	49.566667	Long. (^o)	-138.666667	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008525	Metagenome / Metatranscriptome	332	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P20500mDRAFT_10093221	F008525	AGGAG	MLTFKESFNEVIEAKLKLPSGEKVIKQLTKLGKKKNVTAVITSKFNLYIDGQKLDKYRSAKDAEKAVKEFIK

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