Scaffold TB18AUG2009E_c027147

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold TB18AUG2009E_c027147

Scaffold TB18AUG2009E_c027147

Overview

Basic Information
Taxon OID	3300000203 Open in IMG/M
Scaffold ID	TB18AUG2009E_c027147 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	602
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6864	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075611	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
TB18AUG2009E_0271471	F075611	AGGA	MTKSYLTMRPNELHNALVKRIPEPEMRELKKAEIEQAKKAQRFARLSNFQHKRLWGELLSPLRYELSNAKIGARWDGKHLPERQTAFNAYIRLMTKLESKLEALQLALDDDGRLMTPSHIAKELSIPNKGVHWTDWIPLTKRTEVEVLFEAIPHTPKAKRKIPFKRTQRPNTKLKDTLLKRT

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