Scaffold NICFPass4XylDRAFT_c001189

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NICFPass4XylDRAFT_c001189

Scaffold NICFPass4XylDRAFT_c001189

Overview

Basic Information
Taxon OID	3300000205 Open in IMG/M
Scaffold ID	NICFPass4XylDRAFT_c001189 Open in IMG/M
Source Dataset Name	Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_Xylan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	14422
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Feedstock → Composting → Unclassified → Feedstock Adapted Compost → Feedstock Adapted Compost Microbial Communities From Newby Island Compost Facility, Milpitas Ca

Source Dataset Sampling Location
Location Name	Newby Island compost facility, Milpitas, CA
Coordinates	Lat. (^o)	37.454581	Long. (^o)	-121.928712	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001784	Metagenome / Metatranscriptome	635	Y

Sequences

Protein ID	Family	RBS	Sequence
NICFPass4XylDRAFT_0011898	F001784	GGA	MGXVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAAHKGIQVAMMHSVEALMNSIYDLCTSKLQQPEL

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