Scaffold LP_F_10_SI03_150DRAFT_c1010773

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LP_F_10_SI03_150DRAFT_c1010773

Scaffold LP_F_10_SI03_150DRAFT_c1010773

Overview

Basic Information
Taxon OID	3300000213 Open in IMG/M
Scaffold ID	LP_F_10_SI03_150DRAFT_c1010773 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_150
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1948
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Line P, North Pacific Ocean
Coordinates	Lat. (^o)	48.35	Long. (^o)	-123.3	Alt. (m)		Depth (m)	150
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F100059	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_F_10_SI03_150DRAFT_10107733	F100059	GGA	MKNSFFPIIILFEKAVKEIQHGPKRKFVAKNYVRDKF

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