NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SI34jun09_135mDRAFT_1064009

Scaffold SI34jun09_135mDRAFT_1064009


Overview

Basic Information
Taxon OID3300000226 Open in IMG/M
Scaffold IDSI34jun09_135mDRAFT_1064009 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 135m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 34, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)135
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019751Metagenome / Metatranscriptome228N

Sequences

Protein IDFamilyRBSSequence
SI34jun09_135mDRAFT_10640091F019751N/AAEQINKDTVLMSKYGKCSHAGVHYHIKQIQQEMENTISEDAMDTYIGEFIRARLGFEQDVIALEEIMADEKAKGFDDMDKELYLKFARTRHEIKLDSFKMLQDSALPLQVKKLKMERAKLRPARPMPEVEDHGVSK*
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