Scaffold TB_LI09_3DRAFT

Basic Information
Taxon OID	3300000229 Open in IMG/M
Scaffold ID	TB_LI09_3DRAFT_1000007 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

Scaffold ID

TB_LI09_3DRAFT_1000007 Open in IMG/M

Source Dataset Name

Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	28021
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (23.81%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

28021

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (23.81%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Sampling Location
Location Name	Lago Infinito, wall in 7.1 m depth, Frasassi Caves, Italy
Coordinates	Lat. (^o)	43.383333	Long. (^o)	12.95	Alt. (m)	Depth (m)	7.1
Location on Map

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Source Dataset Sampling Location

Location Name

Lago Infinito, wall in 7.1 m depth, Frasassi Caves, Italy

Coordinates

Lat. (^o)

43.383333

Long. (^o)

12.95

Alt. (m)

Depth (m)

7.1

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004366	Metagenome / Metatranscriptome	441	Y
F010620	Metagenome	301	Y
F010918	Metagenome / Metatranscriptome	297	Y
F013186	Metagenome / Metatranscriptome	273	N
F019139	Metagenome / Metatranscriptome	231	Y
F037224	Metagenome	168	Y
F072337	Metagenome / Metatranscriptome	121	N
F094950	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
TB_LI09_3DRAFT_100000722	F072337	N/A	MKKYRVWLEDNVEPEGGSWWECYLGKDGNLHDFIYTDEQVDTPQWYIDNGYIVEEL*
TB_LI09_3DRAFT_100000723	F010918	N/A	MNRYKVTYNYFENGKKRIAIRILEAIDRDHAIMKMAMWPKLILKVEQYEKI*
TB_LI09_3DRAFT_100000728	F010620	N/A	MKKLIVFLSVLTMFGCSSERMAQYHYKKALKHGLKLITDSDTIKIQTIDSIPVIINDTIIWEKVITTKDSVIFFKNIYIPKTRWQTRIEYRYKTQLVKQDVLKYKYIYKEAKIQKSKTNWMLFLYGAIAGIVVLFVLKFLYKLYNPFK*
TB_LI09_3DRAFT_100000737	F094950	N/A	MVTILGREIPNKIEELTIEQFEAITDINNNKEIDPVDRHLQIFEYLGIPEKEFFDFDIADFIDIVKEFNTTPELTNSMEPVGTLELDGFTYTAELKLTVRETKLIEKIAIHKQKGYISDMMAVMFKADHLTNAEHYTEAHLKLKSKHIRKLKAELCIPYIMFVANKVKKQVENVPTEAVE
TB_LI09_3DRAFT_100000739	F001883	AGTAG	MGRYANTGEFNVLYPTRRRMATILKRILRDDIVDGEGTLVESIRINAKITGFEKLEIQIIAMYYFIFLNNGAFLWNGGVITPRDYVAQFTEELNSAGITAEIYSQYTEWLSKRFPILEVVEVLEKNQRIVYTFEATDPPAGFTPGFPLDV*
TB_LI09_3DRAFT_10000074	F037224	AGGAG	MTLTMHSDTIHKIQVVQAYIHHKTGKRVEIVFNNPSRMQQHLMMLDHAYMVAMGGFKNNNSNGANIGKDK*
TB_LI09_3DRAFT_100000741	F004366	AGCAG	MNSLQAITNHIIAFYTAHKQVFKVGSDFKEQLYNFATQDEKYPLVYIVPSGVIPTENTTEFNFDIYCYDIIQKDRANIITILSDTQQILNDLYIYYMDSTDYSFDVVGVPTFTPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI*
TB_LI09_3DRAFT_10000077	F019139	N/A	MKIKTEHLGKYITMYNGNFETSFTVTEETAKDHKYYTSKGLGYLFEESTPKAKYKGVENEEK*
TB_LI09_3DRAFT_10000079	F013186	AGGA	MKKLLDQYISRAYPEVRAYTAYFLSKMGSYIDADTVINNSYIHVLTINDYVADEDKVKSYLLNTIKYQILWSTSKSHKDDRITAIIDNSPDRIEDDELVDKIREDKIYSFNKGLIEIYRSEIKDQVQKIVFEAYIDKGYTTSRSLAIYFGITHTSAYYLIKELKQNLNKLQYRYETEPSY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold TB_LI09_3DRAFT_1000007

Overview

Ecosystem & Geography

Associated Families

Sequences