Scaffold TB_LI09_3DRAFT_1005364

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold TB_LI09_3DRAFT_1005364

Scaffold TB_LI09_3DRAFT_1005364

Overview

Basic Information
Taxon OID	3300000229 Open in IMG/M
Scaffold ID	TB_LI09_3DRAFT_1005364 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	3455
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Sampling Location
Location Name	Lago Infinito, wall in 7.1 m depth, Frasassi Caves, Italy
Coordinates	Lat. (^o)	43.383333	Long. (^o)	12.95	Alt. (m)		Depth (m)	7.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024002	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
TB_LI09_3DRAFT_10053641	F024002	GAG	MAAVVALIFMTTQDRGSAYLDGAHDPKLIAGQPMGFSIGRAVLTEDLRNLKATRCSHPLCGLRNLFGCSIEGTDDLSQVQPTDMQIDGGRCGRSVAKKHLDMMEARSCFNQVGGEAVPFM

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