Scaffold LPfeb09P12500mDRAFT_1011226

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LPfeb09P12500mDRAFT_1011226

Scaffold LPfeb09P12500mDRAFT_1011226

Overview

Basic Information
Taxon OID	3300000248 Open in IMG/M
Scaffold ID	LPfeb09P12500mDRAFT_1011226 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P12 500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1219
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P12, Pacific Ocean
Coordinates	Lat. (^o)	48.97	Long. (^o)	-130.666667	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099860	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
LPfeb09P12500mDRAFT_10112261	F099860	N/A	TSYTATAAVGNTTVNVMEAVGAEWDTIQMNSTDGAPESNAGEKIILEDASESDDGDMTFLQMEKQTTGTKMNYFFTIAGSDGAGTLTVARQAITLNSSTFKEAGDTETSDSGIMQQVSADITSAAVTMA*

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