NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SI34jun09_100mDRAFT_1048155

Scaffold SI34jun09_100mDRAFT_1048155


Overview

Basic Information
Taxon OID3300000254 Open in IMG/M
Scaffold IDSI34jun09_100mDRAFT_1048155 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 100m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)717
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 34, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009146Metagenome / Metatranscriptome322Y

Sequences

Protein IDFamilyRBSSequence
SI34jun09_100mDRAFT_10481551F009146N/AMNFEHQALFNRITKELDEQVGEEFIKSTKTEKGXTQVSERVVIEKIRVILTGMELSFEEAGSQQSKDFRNVGGIGLNIEIKKTDNPVVYFNDTCPNKDIWYIIFFTGKEYKRKPENNIPAKLLYINGEEFIKDSPWLDEYIQEITALKDKYARGAAKKQLAGIMEVYPRPTFKGNI
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