NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LP_F_10_SI03_135DRAFT_1009160

Scaffold LP_F_10_SI03_135DRAFT_1009160


Overview

Basic Information
Taxon OID3300000255 Open in IMG/M
Scaffold IDLP_F_10_SI03_135DRAFT_1009160 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_135
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2500
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameLine P, North Pacific Ocean
CoordinatesLat. (o)48.35Long. (o)-123.3Alt. (m)Depth (m)135
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F034953Metagenome / Metatranscriptome173N
F046426Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
LP_F_10_SI03_135DRAFT_10091603F046426N/AMGCSILPELVAPVANFAIGFYDHDDYYSKECLWYDEVKLNEDTKKWFLENNPPEVVSKDLAVVSRNNDIYKEVCEVEKSMLDKVEDKVRRLTDE*
LP_F_10_SI03_135DRAFT_10091604F002078AGGAGMDMFMNQAWFQIVGEVVLVFTAITGSLPDRWVQKVPILGTVWPIFNWLAGNIFNNINHPKGMAAKVEVEKEIDEAKAKVRDRVGMPDVLDGM*
LP_F_10_SI03_135DRAFT_10091606F034953GGAMKTMKLTQLLLLIKKVEKDTPVIITWKDAVDYPDEVTVDTLEIKEVYYDTIGFFLSFKDDYVILAYNKEDDNKTYKGTAMIPCSLITDIRRLTDGYDE*
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